mocca.dad_data.apis package
Submodules
mocca.dad_data.apis.allotrope module
Created on Thu May 12 09:10:57 2022
@author: CPH
- mocca.dad_data.apis.allotrope.get_function_paramenters(path)[source]
Reads the parameters of the linear function which describes the wavelength vector out of the data description layer.
- mocca.dad_data.apis.allotrope.get_uvvis_dataset_name(path)[source]
Queries the data description layer of the adf file to find the name of the dataset which is of the type ‘three-dimensional ultraviolet spectrum’ as defined by the AFO.
- mocca.dad_data.apis.allotrope.preprocess_df(df)[source]
Preprocesses the df time column to be in line with the Chemstation API.
- mocca.dad_data.apis.allotrope.read_adf(path, wl_high_pass=None, wl_low_pass=None)[source]
Reads adf files as exported by the Agilent ADF Adapter.
- mocca.dad_data.apis.allotrope.read_adf_datacube(path)[source]
Reads the raw data stored in the data cube layer, which are the HPLC-DAD absorbance values and the time scale.
- mocca.dad_data.apis.allotrope.read_adf_description(path, wl_len)[source]
Queries the adf data description layer to extract the wavlength vector. For this query, the h5ld package is required which can be installed by editable pip install from https://github.com/laura-dirocco/h5ld. In case there are problems with installation, the user can give start and stop values as set on the DAD manually.
mocca.dad_data.apis.angi module
Created on 06/13/22
@author: haascp
- mocca.dad_data.apis.angi.read_angi(path, wl_high_pass=None, wl_low_pass=None)[source]
Chemstation read and processing function.
- mocca.dad_data.apis.angi.read_csv_angi(path)[source]
Reads the UTF-16 encoded 3D data exported by the ChemStation macro. :param path: The directory, in which the experimental data are stored. :type path: str
- Returns:
df – First column is time, the following columns obtain the absorbance values at the given detection wavelength in the column name.
- Return type:
- mocca.dad_data.apis.angi.tidy_df_agilent(dataframe, wl_high_pass=None, wl_low_pass=None)[source]
Tidies the raw data obtained from reading the CSV
- Parameters:
dataframe (pandas.DataFrame) – First column is time, the following columns obtain the absorbance values at the given detection wavelength in the column name.
- Raises:
ValueError – If acquisition rate of the DAD was not constant, this error is raised.
- Returns:
df –
- Columns:
time: Chromatogram time wavelength: Detection wavelength absorbance: Absorbance value
- Return type:
mocca.dad_data.apis.chemstation module
Created on Wed Aug 4 15:28:24 2021
@author: haascp
- mocca.dad_data.apis.chemstation.read_chemstation(path, wl_high_pass=None, wl_low_pass=None)[source]
Chemstation read and processing function.
- mocca.dad_data.apis.chemstation.read_csv_agilent(path)[source]
Reads the UTF-16 encoded 3D data exported by the ChemStation macro. :param path: The directory, in which the experimental data are stored. :type path: str
- Returns:
df – First column is time, the following columns obtain the absorbance values at the given detection wavelength in the column name.
- Return type:
- mocca.dad_data.apis.chemstation.tidy_df_agilent(dataframe, wl_high_pass=None, wl_low_pass=None)[source]
Tidies the raw data obtained from reading the CSV
- Parameters:
dataframe (pandas.DataFrame) – First column is time, the following columns obtain the absorbance values at the given detection wavelength in the column name.
- Raises:
ValueError – If acquisition rate of the DAD was not constant, this error is raised.
- Returns:
df –
- Columns:
time: Chromatogram time wavelength: Detection wavelength absorbance: Absorbance value
- Return type:
mocca.dad_data.apis.custom module
Created on Mon Aug 30 15:17:53 2021
@author: haascp
mocca.dad_data.apis.empower module
Created on Fri Mar 25 14:53:54 2022
@author: haascp
For more information on how to export raw data out of Empower see https://support.waters.com/KB_Inf/Empower_Breeze/WKB77571_How_to_export_3D_raw _data_from_Empower_to_a_Microsoft_Excel_spreadsheet
mocca.dad_data.apis.labsolutions module
Created on Mon Aug 30 15:17:53 2021
@author: haascp
- mocca.dad_data.apis.labsolutions.read_labsolutions(path, wl_high_pass=None, wl_low_pass=None)[source]
Labsolutions read and processing function.
- mocca.dad_data.apis.labsolutions.read_txt_shimadzu(path)[source]
Reads the 3D data exported by the LabSolutions software. :param path: The directory, in which the experimental data are stored. :type path: str
- Returns:
df – First column is time, the following columns obtain the absorbance values at the given detection wavelength in the column name.
- Return type: